SRR3127738.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127738.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1460849
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12693	0.8688783029594435	No Hit
CCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTG	3960	0.2710752446009136	TruSeq Adapter, Index 14 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTG	3942	0.26984308439818216	TruSeq Adapter, Index 14 (95% over 24bp)
CTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTGC	3735	0.2556732420667708	Illumina PCR Primer Index 3 (95% over 23bp)
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2619	0.17927930949742238	No Hit
AGCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCT	1488	0.10185857675913117	Illumina PCR Primer Index 3 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	4425	84.60133	1
CGTAGGG	465	83.88041	2
AGGGATG	3580	80.33207	5
ACGGGTA	195	79.5243	4
TAGGGCA	965	75.965744	4
TAAGGGA	1750	75.18661	3
CGAAGGG	1210	74.56779	2
TAGGGCG	335	74.34497	4
GAAGGGC	2095	73.79592	3
GGTAAGG	920	73.101395	1
GCGGGAT	695	73.022964	4
AGAGGGC	2060	72.996704	3
AAGGGAT	3705	72.92898	4
AAGGGCA	2880	72.1191	4
GAGGGAT	2935	72.0485	4
AGGGATT	2060	71.85613	5
AGGGCAC	1575	71.60629	5
GGATGGC	2625	71.24826	7
AGGGCAT	1825	70.80931	5
GTAGGGC	775	70.33586	3