SRR3127736.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127736.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1347241
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12261	0.9100821605043197	No Hit
GCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTG	3825	0.28391356854490024	TruSeq Adapter, Index 14 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTG	3346	0.2483594249284278	TruSeq Adapter, Index 14 (95% over 24bp)
CTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTGC	3206	0.2379678171908367	Illumina PCR Primer Index 3 (95% over 23bp)
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2316	0.17190688228757883	No Hit
AGCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCT	1408	0.10450988353234499	Illumina PCR Primer Index 3 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTAGGG	320	86.890114	2
CGTTTTT	4295	85.39776	1
AGGGATG	3160	78.52147	5
ACGGGTA	155	76.01104	4
AGCGGGA	990	75.68857	3
CGAAGGG	1240	75.63098	2
GGATGGC	2435	75.26746	7
AAGGGAT	3675	74.89	4
GCGGGAT	690	74.446754	4
GAGGGAT	2630	74.36365	4
AGAGGGC	1915	74.320145	3
CGGGTAT	115	73.55569	5
GGGCGAT	575	73.55569	6
AGGGATT	2055	73.406555	5
AGGGAAT	2030	73.38458	5
AGGGTAT	980	73.36805	5
AGTACGG	225	73.33571	1
TACGCGG	65	72.52983	1
AAGGGCA	2675	72.2318	4
TAAGGGA	1490	72.113556	3