Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127709.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2260446 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 23371 | 1.0339110069428776 | No Hit |
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT | 2622 | 0.11599480810424137 | No Hit |
GCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTG | 2467 | 0.10913775423080224 | No Hit |
CCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTG | 2290 | 0.10130744109790722 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 7040 | 0.0 | 84.85545 | 1 |
ATAGGGA | 2280 | 0.0 | 70.84818 | 3 |
GAATAGG | 1435 | 0.0 | 70.25787 | 1 |
AGGGCAT | 2860 | 0.0 | 69.17862 | 5 |
ATAGGGC | 1720 | 0.0 | 68.9988 | 3 |
TAGAGGG | 4305 | 0.0 | 68.91866 | 2 |
TAGGGCA | 1780 | 0.0 | 68.7896 | 4 |
CGTAGGG | 550 | 0.0 | 68.50097 | 2 |
ATAGAGG | 1815 | 0.0 | 68.00765 | 1 |
CGAAGGG | 2535 | 0.0 | 67.99431 | 2 |
AAGGGCA | 4630 | 0.0 | 67.74273 | 4 |
AAGAGGG | 8560 | 0.0 | 67.6157 | 2 |
GTAGGGA | 1940 | 0.0 | 66.75755 | 3 |
GGATAGG | 1470 | 0.0 | 66.66212 | 1 |
TAGACGG | 425 | 0.0 | 66.5113 | 1 |
TAGGGAT | 1780 | 0.0 | 66.408424 | 4 |
GGTAAGG | 1365 | 0.0 | 66.26767 | 1 |
TGTAGGG | 1760 | 0.0 | 66.092735 | 2 |
ATAAGGG | 3465 | 0.0 | 65.782684 | 2 |
AGTAGGG | 3645 | 0.0 | 65.76422 | 2 |