SRR3127696.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127696.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2125347
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	81308	3.8256341199813493	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCT	8786	0.41339131915870675	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTT	8570	0.4032282728420347	No Hit
CGCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCT	5800	0.2728966140587866	No Hit
CCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCTG	4757	0.22382227466855997	TruSeq Adapter, Index 22 (95% over 21bp)
CGTTTTCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTC	4389	0.20650745501793352	No Hit
CGTCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTC	3382	0.1591269566804856	No Hit
CTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCTGC	3040	0.14303546667908817	TruSeq Adapter, Index 20 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	22440	90.172615	1
TAGGGCA	1290	74.691826	4
GAATAGG	1345	74.15521	1
CGTAGGG	555	71.987206	2
CGTTTCT	1175	70.87018	1
GTAGGGA	1250	70.31545	3
AGGGATG	2675	70.27886	5
AGTAGGG	3265	69.38942	2
ATAGCGG	475	69.33181	1
ATAGGGC	1395	69.071495	3
TAGACGG	280	68.88964	1
AGAGGGC	3730	68.67629	3
AGGGTAC	960	68.54019	5
GAGGGAT	2040	67.96742	4
AAGGGCA	3825	67.952065	4
AGGGCAT	2345	67.9431	5
AGTAAGG	1325	67.107956	1
TAGAGGG	3715	66.804306	2
TAGGGTA	550	66.65624	4
GTAGGGT	790	66.63618	3