SRR3127694.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127694.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1996730
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	79735	3.9932790111832843	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCT	8630	0.432206657885643	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTT	7944	0.39785048554386426	No Hit
CGCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCT	5477	0.2742984780115489	No Hit
CCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCTG	4291	0.2149013637296981	TruSeq Adapter, Index 22 (95% over 21bp)
CGTTTTCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTC	3984	0.19952622537849382	No Hit
CGTCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTC	3216	0.16106333855854324	No Hit
CTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCTGC	2636	0.13201584590805968	TruSeq Adapter, Index 20 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	22030	90.84074	1
TAGGGCA	1125	74.13817	4
GAATAGG	1010	73.28173	1
CGTTTCT	1250	72.41168	1
ATAGCGG	400	71.893105	1
AGGGCAT	2055	70.89161	5
TAGCGGG	1020	70.2206	2
GGTAAGG	1175	69.41058	1
ATAGGGC	1380	68.975266	3
AGTAGGG	3030	68.58309	2
TAGAGGG	3540	68.41967	2
AGAGGGC	3110	67.424965	3
AGGGATG	2535	66.92282	5
ATAGGGA	1375	66.82716	3
AAGGGCA	3745	66.68761	4
ACGGGTA	290	66.62036	4
AGATAGG	1225	66.19265	1
GTTTTTT	30215	66.10921	2
ATAAGGG	2650	65.79259	2
GTAGGGC	1015	64.99547	3