Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127676.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2080911 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 22562 | 1.0842366636535632 | No Hit |
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT | 2408 | 0.11571854827044502 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 6630 | 0.0 | 85.00251 | 1 |
TAGGGCA | 1460 | 0.0 | 73.55603 | 4 |
AGTAAGG | 1285 | 0.0 | 72.973305 | 1 |
ATAGGGC | 1705 | 0.0 | 72.3791 | 3 |
AGTAGGG | 3635 | 0.0 | 71.00884 | 2 |
AAGGGTA | 1460 | 0.0 | 70.97511 | 4 |
ATAGGGA | 1825 | 0.0 | 70.45893 | 3 |
GGTAAGG | 1360 | 0.0 | 70.33495 | 1 |
GAATAGG | 1315 | 0.0 | 70.23351 | 1 |
ATAGAGG | 1495 | 0.0 | 69.34187 | 1 |
ATAAGGG | 3175 | 0.0 | 68.39014 | 2 |
CGTAGGG | 565 | 0.0 | 68.35994 | 2 |
AAGGGCA | 4370 | 0.0 | 68.01179 | 4 |
TAGAGGG | 4000 | 0.0 | 67.94415 | 2 |
GAGGGAT | 2315 | 0.0 | 67.14276 | 4 |
AGGGTAC | 835 | 0.0 | 66.97531 | 5 |
GCATAGG | 570 | 0.0 | 66.96136 | 1 |
TATAGGG | 1745 | 0.0 | 66.94105 | 2 |
ATAGCGG | 500 | 0.0 | 66.91176 | 1 |
AAGAGGG | 8560 | 0.0 | 66.910774 | 2 |