Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127661.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2109453 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 18980 | 0.899759321492349 | No Hit |
CTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC | 4396 | 0.2083952569694608 | No Hit |
GCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTG | 4062 | 0.19256176838260913 | No Hit |
CCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTG | 3879 | 0.18388653361795687 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 7345 | 0.0 | 86.81099 | 1 |
ATAGCGG | 360 | 0.0 | 81.162964 | 1 |
CGTAGGG | 415 | 0.0 | 80.58649 | 2 |
TAGGGCG | 565 | 0.0 | 79.200356 | 4 |
AAGGGAT | 5845 | 0.0 | 78.49219 | 4 |
AAGGGCG | 1160 | 0.0 | 76.33994 | 4 |
ATAGGGA | 2830 | 0.0 | 76.06445 | 3 |
AGGGATT | 4200 | 0.0 | 75.863464 | 5 |
AGGGATG | 4180 | 0.0 | 75.66431 | 5 |
TAAGGGA | 2675 | 0.0 | 75.36539 | 3 |
TAGGGCA | 1710 | 0.0 | 75.20012 | 4 |
CGAAGGG | 1840 | 0.0 | 75.006996 | 2 |
ATAGGGC | 1600 | 0.0 | 74.776596 | 3 |
AGGGCAT | 2440 | 0.0 | 73.38165 | 5 |
ACGGGAT | 835 | 0.0 | 73.33459 | 4 |
AGGGATC | 2630 | 0.0 | 73.262276 | 5 |
CGAGGGA | 1535 | 0.0 | 73.03323 | 3 |
CGAGGGC | 875 | 0.0 | 72.135445 | 3 |
AGTACGG | 190 | 0.0 | 71.930504 | 1 |
GAGGGAT | 4500 | 0.0 | 71.7018 | 4 |