SRR3127657.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127657.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1676950
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	63857	3.8079251021199205	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTT	5561	0.33161394197799576	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCT	5185	0.3091922836101255	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCT	4328	0.258087599511017	No Hit
CCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTG	3065	0.18277229494021885	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTC	2445	0.14580041146128386	No Hit
CGTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTC	2108	0.1257044038283789	No Hit
CTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	2080	0.12403470586481409	TruSeq Adapter, Index 22 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	17210	90.74105	1
ATAGCGG	420	78.396255	1
TAGGGCA	1235	77.247955	4
AGGGATG	3520	75.16638	5
GAGGGAT	2495	74.59033	4
CGTAGGG	425	72.983696	2
ATAGGGC	1400	71.838394	3
CGGGATG	815	71.502625	5
CGTTTCT	770	71.47295	1
GTAGGGA	1475	71.37183	3
GGATGGC	2865	69.876305	7
AGGGTAC	785	69.44584	5
TAGAGGG	2660	69.08217	2
AAGGGAT	3485	68.63931	4
AGGGATC	1415	68.08561	5
ATAGGGA	1915	67.734695	3
AGAGGGC	2810	67.56875	3
GAATAGG	1100	67.563324	1
GGTAAGG	1085	67.196785	1
AGGGCAT	1785	67.13668	5