SRR3127655.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127655.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1566243
Sequences flagged as poor quality	0
Sequence length	100
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	62198	3.9711590091703526	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTT	5125	0.32721614717511904	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCT	4656	0.2972718792677765	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCT	3915	0.2499612129152373	No Hit
CCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTG	2760	0.17621786657625926	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTC	2236	0.14276201074801292	No Hit
CGTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTC	1938	0.1237355889220255	No Hit
CTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	1836	0.1172231895050768	TruSeq Adapter, Index 22 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	17145	90.27688	1
AGGGATG	3485	78.61763	5
ATAGCGG	270	78.52853	1
GAGGGAT	2725	75.353615	4
CGAGGGA	1080	74.13261	3
GTAGGGA	1275	72.76796	3
AGGGATC	1525	72.41895	5
TAACGGG	510	72.02919	2
AAGGGAT	3470	71.93339	4
ATAGGGA	1670	71.91307	3
ATAGGGC	1050	71.76535	3
GGATGGC	2685	70.36164	7
TAGGGAT	1625	70.136826	4
AGAGGGC	2635	70.06314	3
ATGCGGG	695	69.79697	2
TAGGGCA	1095	69.67629	4
GAATAGG	825	69.676216	1
AGTAGGG	2405	68.73472	2
GTAGGGT	535	68.663345	3
AAGGGCA	3055	68.601395	4