Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127581.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3104340 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 33254 | 1.0712099834425353 | No Hit |
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC | 4663 | 0.1502090621516973 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 10095 | 0.0 | 84.87653 | 1 |
TAGGGCA | 2225 | 0.0 | 74.56204 | 4 |
ATAGGGC | 2385 | 0.0 | 73.89515 | 3 |
AAGGGTA | 2450 | 0.0 | 71.74284 | 4 |
AGTAGGG | 5425 | 0.0 | 70.95079 | 2 |
AGGGATG | 5255 | 0.0 | 70.74192 | 5 |
ATAGCGG | 680 | 0.0 | 70.578964 | 1 |
CGTAGGG | 780 | 0.0 | 70.49598 | 2 |
CGAAGGG | 3095 | 0.0 | 70.002464 | 2 |
GTACGGG | 810 | 0.0 | 69.04544 | 2 |
TAGCGGG | 1625 | 0.0 | 68.543785 | 2 |
TAGAGGG | 5935 | 0.0 | 68.338135 | 2 |
GAATAGG | 1800 | 0.0 | 68.22633 | 1 |
AGGGCAT | 3345 | 0.0 | 68.1426 | 5 |
ATAGGGA | 2920 | 0.0 | 68.08173 | 3 |
TAGGGCG | 620 | 0.0 | 67.46389 | 4 |
AGATAGG | 1920 | 0.0 | 67.14804 | 1 |
AGGGTAC | 1785 | 0.0 | 67.13902 | 5 |
AGAGGGC | 5175 | 0.0 | 66.20492 | 3 |
AAGAGGG | 11505 | 0.0 | 66.1353 | 2 |