Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127558.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1931821 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17570 | 0.9095045555462955 | No Hit |
CTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC | 2447 | 0.12666805050778512 | Illumina Single End Adapter 1 (95% over 22bp) |
GCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTG | 2320 | 0.12009394245118983 | Illumina Single End Adapter 1 (95% over 21bp) |
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC | 2237 | 0.11579747813073779 | No Hit |
CCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTG | 2100 | 0.10870572377047356 | Illumina Single End Adapter 1 (95% over 21bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTAGGG | 610 | 0.0 | 84.745415 | 2 |
CGTTTTT | 5970 | 0.0 | 84.1502 | 1 |
TAGGGTA | 540 | 0.0 | 74.844185 | 4 |
TAGGGCG | 385 | 0.0 | 73.23925 | 4 |
TAGGGCA | 1205 | 0.0 | 70.59028 | 4 |
GTACGGG | 500 | 0.0 | 70.492775 | 2 |
AGTAGGG | 3125 | 0.0 | 70.37999 | 2 |
GAATAGG | 1290 | 0.0 | 68.91763 | 1 |
TAGCGGG | 995 | 0.0 | 68.48545 | 2 |
AGGGCGA | 1020 | 0.0 | 68.19086 | 5 |
TAGAGGG | 3560 | 0.0 | 67.456566 | 2 |
GAGGGAT | 2325 | 0.0 | 66.50072 | 4 |
AAGGGCG | 980 | 0.0 | 66.176895 | 4 |
ATAGCGG | 420 | 0.0 | 66.07861 | 1 |
AAGAGGG | 7540 | 0.0 | 65.56888 | 2 |
ATAGGGC | 1360 | 0.0 | 65.30949 | 3 |
TATAGGG | 1430 | 0.0 | 65.07026 | 2 |
ATGAGGG | 3215 | 0.0 | 64.755424 | 2 |
AGGGTAA | 920 | 0.0 | 64.36463 | 5 |
AGTAAGG | 1090 | 0.0 | 64.30104 | 1 |