SRR3127535.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127535.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	888057
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8980	1.0111963533872261	No Hit
CCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTG	2383	0.2683386314166771	TruSeq Adapter, Index 22 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGC	2359	0.2656361021871344	Illumina Single End Adapter 2 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTG	2294	0.25831675219045624	TruSeq Adapter, Index 22 (95% over 23bp)
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	1105	0.12442894994352839	No Hit
AGCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCT	919	0.10348434841457249	No Hit
AGAGCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTT	910	0.10247089995349397	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTAGGG	290	90.99355	2
GCGTAGG	150	84.866905	1
CGTTTTT	3170	84.33147	1
CGAAGGG	670	82.99039	2
TAGGGCG	135	80.28135	4
GGTAAGG	465	79.08743	1
AGGGATG	2220	78.95891	5
TAGGGCA	640	78.781525	4
AGGGCAT	875	75.1909	5
AGGGAAT	1365	75.053185	5
AAGGGAT	2175	73.8781	4
AGGGCTC	640	73.42861	5
AAGGGCA	1420	73.005394	4
GGATGGC	1580	72.870926	7
ATAGCGG	220	72.865524	1
TAGGGTC	215	72.32627	4
TAAGGGC	975	71.52827	3
TAAGGGA	1005	71.268585	3
AGGGCAA	1165	70.9957	5
GTAGGGA	760	70.682495	3