SRR3127527.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127527.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6545819
Sequences flagged as poor quality	0
Sequence length	100
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	214414	3.275587057937288	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCT	23374	0.35708289520379344	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTT	21741	0.33213567316786485	No Hit
CGCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCT	18167	0.27753593553381173	No Hit
CCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCTG	11265	0.17209458434460226	TruSeq Adapter, Index 22 (95% over 21bp)
CGTTTTCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTC	10614	0.1621493047699608	No Hit
CGTCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTC	9035	0.1380270368001315	No Hit
CTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCTGC	7688	0.11744901592909916	TruSeq Adapter, Index 20 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	59975	90.803764	1
ATAGGGC	2900	72.440765	3
TAGTAGG	2050	72.26404	1
AGTAGGG	9550	69.24221	2
GTTTTTT	79505	68.73703	2
GGATAGG	3400	68.0537	1
AGATAGG	3315	67.67066	1
AAGGGGC	23500	67.33572	4
GAATAGG	3480	67.029816	1
ATGTAGG	1595	66.34182	1
ATAGGGA	3175	66.3144	3
GATAGGG	8735	66.17933	2
GGTAAGG	3435	66.12809	1
TATAGGG	4205	66.05438	2
AGTAAGG	3700	65.33215	1
TAGAGGG	11490	65.036514	2
ATAAGGG	7610	64.35218	2
AATAGGG	7675	64.17458	2
ATAGAGG	4070	63.89933	1
GTATAGG	1990	63.57184	1