Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127491.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2846576 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 31197 | 1.0959482550263897 | No Hit |
CTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGC | 4495 | 0.15790901068511784 | No Hit |
GCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTG | 4280 | 0.15035607691486194 | No Hit |
CCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTG | 3967 | 0.13936041054234982 | No Hit |
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC | 3411 | 0.1198281725132229 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 9845 | 0.0 | 85.71721 | 1 |
CGTAGGG | 860 | 0.0 | 76.00427 | 2 |
TAGGGCA | 1600 | 0.0 | 73.13903 | 4 |
AGTAGGG | 4355 | 0.0 | 69.537544 | 2 |
TATAGGG | 2175 | 0.0 | 69.40127 | 2 |
AGGGCAT | 2265 | 0.0 | 68.88739 | 5 |
GAATAGG | 1930 | 0.0 | 68.03781 | 1 |
ATAGGGA | 2605 | 0.0 | 67.8344 | 3 |
ACGGGTA | 305 | 0.0 | 67.79891 | 4 |
ATAGGGC | 1660 | 0.0 | 67.664314 | 3 |
AGGGATG | 3880 | 0.0 | 67.4673 | 5 |
TAGAGGG | 4780 | 0.0 | 67.09314 | 2 |
TAGGGTA | 915 | 0.0 | 66.77165 | 4 |
AGGGTAC | 1295 | 0.0 | 66.412704 | 5 |
AGAGGGC | 3625 | 0.0 | 66.24953 | 3 |
GTAGGGC | 1530 | 0.0 | 66.0415 | 3 |
CGAAGGG | 3005 | 0.0 | 66.03735 | 2 |
AAGGGTA | 1930 | 0.0 | 65.99057 | 4 |
GGTAAGG | 1720 | 0.0 | 65.94655 | 1 |
ATAGAGG | 1775 | 0.0 | 65.75924 | 1 |