Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127487.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3177083 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 41927 | 1.3196696466538644 | No Hit |
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC | 3515 | 0.11063607718149006 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 13445 | 0.0 | 85.75782 | 1 |
ACGGGTA | 355 | 0.0 | 72.82449 | 4 |
GGTAAGG | 1900 | 0.0 | 71.52508 | 1 |
AGGGATG | 4280 | 0.0 | 70.39753 | 5 |
TAGAGGG | 5490 | 0.0 | 69.52273 | 2 |
ATAGGGA | 2800 | 0.0 | 68.66073 | 3 |
GAATAGG | 2290 | 0.0 | 67.96833 | 1 |
ATGTAGG | 1115 | 0.0 | 67.89928 | 1 |
ATAGCGG | 875 | 0.0 | 67.1763 | 1 |
CGTAGGG | 875 | 0.0 | 67.149864 | 2 |
TGTAGGG | 2340 | 0.0 | 66.891594 | 2 |
TAGGGCA | 1865 | 0.0 | 66.53777 | 4 |
GTACGGG | 730 | 0.0 | 66.32198 | 2 |
AGGGCAT | 2395 | 0.0 | 65.747986 | 5 |
TAAGGGA | 2710 | 0.0 | 65.73748 | 3 |
AAGAGGG | 11750 | 0.0 | 65.36681 | 2 |
AAGGGCA | 4575 | 0.0 | 65.241776 | 4 |
GTAGGGA | 2400 | 0.0 | 65.21931 | 3 |
AGTAGGG | 5810 | 0.0 | 64.722755 | 2 |
TAAGAGG | 2550 | 0.0 | 64.54193 | 1 |