Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127463.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2433120 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 31494 | 1.294387453146577 | No Hit |
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC | 5718 | 0.23500690471493393 | No Hit |
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT | 2878 | 0.11828434273689749 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 9555 | 0.0 | 85.77667 | 1 |
TAAGGGA | 2315 | 0.0 | 72.28674 | 3 |
AGGGATG | 4650 | 0.0 | 71.77366 | 5 |
GGTAAGG | 1345 | 0.0 | 71.66946 | 1 |
CGTAGGG | 735 | 0.0 | 71.62925 | 2 |
AGGGCAT | 2275 | 0.0 | 71.284874 | 5 |
CTACGAC | 1065 | 0.0 | 70.62038 | 5 |
TAGAGGG | 3925 | 0.0 | 68.74354 | 2 |
AGTAGGG | 3815 | 0.0 | 68.50779 | 2 |
AGAGGGC | 3400 | 0.0 | 68.43621 | 3 |
ACGGGTA | 275 | 0.0 | 68.37337 | 4 |
AAGAGGG | 8170 | 0.0 | 68.17984 | 2 |
TAGGGCA | 1245 | 0.0 | 67.96148 | 4 |
ATAGAGG | 1440 | 0.0 | 67.92089 | 1 |
ATGCGGG | 1280 | 0.0 | 67.20488 | 2 |
AGGGAAT | 2830 | 0.0 | 67.104965 | 5 |
GGATGGC | 4030 | 0.0 | 67.0691 | 7 |
ACGGGAT | 970 | 0.0 | 66.875496 | 4 |
GTACGGG | 415 | 0.0 | 66.82879 | 2 |
ATAGGGA | 2625 | 0.0 | 66.794266 | 3 |