Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127451.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1120303 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16374 | 1.4615688791335915 | No Hit |
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC | 11628 | 1.037933487636827 | No Hit |
CTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC | 2910 | 0.2597511566067394 | No Hit |
CCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTG | 2784 | 0.24850419931036513 | No Hit |
GCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTG | 2327 | 0.2077116637195473 | No Hit |
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA | 1514 | 0.13514201068817988 | No Hit |
TCCGCTACGACCAACTCATACACCTGTCTCTTATACACATCTGACGCCTA | 1458 | 0.13014336300090243 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTAACGG | 45 | 0.0 | 94.04023 | 1 |
CGGGTAT | 150 | 0.0 | 90.89338 | 5 |
GTACGGG | 220 | 0.0 | 87.61666 | 2 |
CGTTTTT | 6350 | 0.0 | 87.15382 | 1 |
AGGGATG | 3420 | 0.0 | 85.367195 | 5 |
CGCTACG | 1815 | 0.0 | 83.666466 | 3 |
ATAGCGG | 205 | 0.0 | 82.571915 | 1 |
TCCGCTA | 1880 | 0.0 | 82.035095 | 1 |
CGTAGGG | 265 | 0.0 | 81.60889 | 2 |
CGACCAA | 1845 | 0.0 | 81.286766 | 8 |
ACGACCA | 1840 | 0.0 | 81.252144 | 7 |
GCTACGA | 1870 | 0.0 | 81.20569 | 4 |
GGATGGC | 3010 | 0.0 | 81.0637 | 7 |
AGGACGG | 245 | 0.0 | 80.60592 | 1 |
CTACGAC | 1920 | 0.0 | 79.335815 | 5 |
CGAAGGG | 805 | 0.0 | 77.675 | 2 |
GAGGGAT | 2620 | 0.0 | 77.51897 | 4 |
AAGGGTA | 845 | 0.0 | 76.77997 | 4 |
AGGGCTA | 680 | 0.0 | 76.74315 | 5 |
GGAATGC | 1670 | 0.0 | 76.5734 | 7 |