Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127449.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1029259 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12667 | 1.2306912060035424 | No Hit |
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC | 9702 | 0.942619884790903 | No Hit |
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCCTAGGAAT | 3955 | 0.38425702374232334 | No Hit |
CTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC | 3549 | 0.3448111699776247 | No Hit |
CCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTG | 3439 | 0.33412386969654867 | No Hit |
GCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTG | 3372 | 0.3276143322526206 | No Hit |
TCCGCTACGACCAACTCATACACCTGTCTCTTATACACATCTGACGCCTA | 1922 | 0.18673628309298243 | No Hit |
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA | 1602 | 0.15564595500257955 | No Hit |
TAGACCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCT | 1355 | 0.13164810800779977 | No Hit |
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA | 1215 | 0.11804608946824852 | No Hit |
CGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCT | 1113 | 0.10813604738943258 | No Hit |
AAAGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTT | 1110 | 0.10784457556358507 | No Hit |
AGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCT | 1096 | 0.10648437370962993 | No Hit |
GGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCC | 1038 | 0.10084925174324441 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGATGG | 20 | 1.8241079E-5 | 94.14173 | 1 |
CGGGTAT | 155 | 0.0 | 90.96328 | 5 |
CGTTTTT | 5300 | 0.0 | 87.83601 | 1 |
AGGGATG | 3125 | 0.0 | 87.077324 | 5 |
ACGGGTA | 180 | 0.0 | 86.16244 | 4 |
CGCTACG | 1675 | 0.0 | 83.61381 | 3 |
GGATGGC | 2740 | 0.0 | 83.36087 | 7 |
CGTAGGG | 255 | 0.0 | 83.02584 | 2 |
GCTACGA | 1690 | 0.0 | 82.593575 | 4 |
ACGACCA | 1665 | 0.0 | 82.422386 | 7 |
TAGGGCA | 555 | 0.0 | 82.140114 | 4 |
AGGGTAC | 405 | 0.0 | 81.23058 | 5 |
CTACGAC | 1725 | 0.0 | 80.91776 | 5 |
TCCGCTA | 1770 | 0.0 | 80.57893 | 1 |
CGACCAA | 1710 | 0.0 | 80.52821 | 8 |
GCGGGAT | 520 | 0.0 | 80.438354 | 4 |
GACGGGT | 170 | 0.0 | 80.17254 | 3 |
TAGCGGG | 420 | 0.0 | 79.53348 | 2 |
GGAATGC | 1440 | 0.0 | 78.98224 | 7 |
GTACGGG | 155 | 0.0 | 78.91919 | 2 |