Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127429.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2198473 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 55752 | 2.53594199246477 | No Hit |
CGTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCT | 4012 | 0.18249030122271231 | No Hit |
CGTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTT | 3893 | 0.17707745330508948 | No Hit |
CGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCT | 3427 | 0.15588092280414634 | No Hit |
CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC | 2495 | 0.11348786180226003 | Illumina Single End Adapter 1 (95% over 21bp) |
CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG | 2349 | 0.10684688872685724 | No Hit |
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC | 2283 | 0.10384480500783955 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 18270 | 0.0 | 89.1329 | 1 |
ATAGGGC | 1120 | 0.0 | 74.91759 | 3 |
AGGGATG | 3290 | 0.0 | 74.2752 | 5 |
AGTAGGG | 3340 | 0.0 | 73.108025 | 2 |
TAGGGCA | 1085 | 0.0 | 71.686264 | 4 |
TAGAGGG | 3725 | 0.0 | 69.60143 | 2 |
AGTAAGG | 1360 | 0.0 | 69.007164 | 1 |
AGGGTAC | 975 | 0.0 | 68.923584 | 5 |
TAGGGTA | 785 | 0.0 | 67.25586 | 4 |
ATGCGGG | 1015 | 0.0 | 66.87722 | 2 |
GTAGGGT | 770 | 0.0 | 66.72945 | 3 |
ATAGGGT | 880 | 0.0 | 66.423355 | 3 |
GGATAGG | 1335 | 0.0 | 65.70701 | 1 |
GGTAAGG | 1170 | 0.0 | 65.70248 | 1 |
GAGGGAT | 2845 | 0.0 | 65.61372 | 4 |
TAGCGGG | 1235 | 0.0 | 65.26959 | 2 |
AAGAGGG | 7385 | 0.0 | 65.23522 | 2 |
ATAGAGG | 1605 | 0.0 | 65.23158 | 1 |
AGGGAAT | 2440 | 0.0 | 64.90475 | 5 |
GATAGGG | 3145 | 0.0 | 64.3011 | 2 |