Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127358.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2225565 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 23072 | 1.036680573247692 | No Hit |
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC | 6688 | 0.3005079608998164 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 8545 | 0.0 | 83.410934 | 1 |
AGGGATG | 5105 | 0.0 | 75.873344 | 5 |
CGTAGGG | 690 | 0.0 | 74.937874 | 2 |
ATAGCGG | 475 | 0.0 | 73.24432 | 1 |
GTACGGG | 475 | 0.0 | 72.24155 | 2 |
AGAGGGC | 3555 | 0.0 | 71.1378 | 3 |
AGTAGGG | 3510 | 0.0 | 70.442764 | 2 |
TAGAGGG | 4430 | 0.0 | 70.350555 | 2 |
ATAACGG | 235 | 0.0 | 70.02225 | 1 |
ATGCGGG | 1175 | 0.0 | 69.6096 | 2 |
TAGGGTA | 875 | 0.0 | 68.76376 | 4 |
TACGACC | 1140 | 0.0 | 68.44804 | 6 |
TAAGGGA | 2485 | 0.0 | 68.28709 | 3 |
AAGAGGG | 8435 | 0.0 | 68.099495 | 2 |
AGGGCAT | 2340 | 0.0 | 68.09914 | 5 |
GGATGGC | 4425 | 0.0 | 68.094536 | 7 |
ATAGGGC | 1510 | 0.0 | 67.86366 | 3 |
TAGGGAT | 1940 | 0.0 | 67.844406 | 4 |
ACGGGTA | 300 | 0.0 | 67.37596 | 4 |
AATGCGG | 475 | 0.0 | 67.305595 | 1 |