Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127343.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2021051 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 20487 | 1.0136805058358251 | No Hit |
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC | 6557 | 0.32443515774713255 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 7080 | 0.0 | 82.60938 | 1 |
AGGGATG | 5585 | 0.0 | 79.11343 | 5 |
CGTAGGG | 655 | 0.0 | 78.22233 | 2 |
TAAGGGA | 2255 | 0.0 | 76.50064 | 3 |
ATAGCGG | 520 | 0.0 | 75.948326 | 1 |
GGATGGC | 4700 | 0.0 | 75.21011 | 7 |
TAGCGGG | 1180 | 0.0 | 72.49949 | 2 |
CGAGGGA | 1560 | 0.0 | 70.50774 | 3 |
TAGGGTA | 720 | 0.0 | 70.50774 | 4 |
ATGCGGG | 1020 | 0.0 | 70.50774 | 2 |
GAGGGAT | 4075 | 0.0 | 70.478905 | 4 |
AAGGGAT | 5650 | 0.0 | 69.634186 | 4 |
ATGGCAC | 4725 | 0.0 | 69.426285 | 9 |
TAGAGGG | 3735 | 0.0 | 69.34362 | 2 |
GGGATGG | 5735 | 0.0 | 68.92997 | 6 |
AGGGCAT | 2190 | 0.0 | 68.68334 | 5 |
AAGGGTA | 1685 | 0.0 | 68.62474 | 4 |
GTACGGG | 535 | 0.0 | 68.53088 | 2 |
TAGGGCA | 1255 | 0.0 | 68.16684 | 4 |
CGGGATG | 1120 | 0.0 | 67.98961 | 5 |