Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127325.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1828748 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 20833 | 1.139194684013325 | No Hit |
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC | 1870 | 0.10225575092905091 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 7140 | 0.0 | 85.01508 | 1 |
CGTAGGG | 570 | 0.0 | 75.87069 | 2 |
TAGACGG | 290 | 0.0 | 72.9596 | 1 |
AGGGATG | 3970 | 0.0 | 71.51669 | 5 |
TAGGGCA | 1035 | 0.0 | 71.30506 | 4 |
CGAAGGG | 1870 | 0.0 | 71.13869 | 2 |
ATAGGGA | 2115 | 0.0 | 70.010185 | 3 |
GAATAGG | 1250 | 0.0 | 69.58725 | 1 |
TAGAGGG | 3580 | 0.0 | 68.80331 | 2 |
TATAGGG | 1825 | 0.0 | 68.771645 | 2 |
AAGGGAT | 3985 | 0.0 | 67.23688 | 4 |
AGTAGGG | 3045 | 0.0 | 67.15262 | 2 |
GAGGGAT | 3340 | 0.0 | 67.13252 | 4 |
AGGGCAT | 1975 | 0.0 | 66.6426 | 5 |
GTAGGGA | 1705 | 0.0 | 66.44368 | 3 |
AGATAGG | 1190 | 0.0 | 66.37893 | 1 |
ACGGGTA | 255 | 0.0 | 66.362595 | 4 |
TAGGGAT | 1800 | 0.0 | 66.33187 | 4 |
GGTAAGG | 1180 | 0.0 | 66.14455 | 1 |
ATAGGGC | 1090 | 0.0 | 65.98207 | 3 |