Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127317.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2280620 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 23780 | 1.042698915207268 | No Hit |
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC | 6144 | 0.269400426199893 | No Hit |
GCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTG | 3001 | 0.13158702458103497 | No Hit |
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT | 2661 | 0.11667879787075443 | No Hit |
CTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC | 2569 | 0.11264480711385501 | No Hit |
CCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTG | 2565 | 0.11246941621138112 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 7450 | 0.0 | 86.21074 | 1 |
CGTAGGG | 595 | 0.0 | 77.451035 | 2 |
AGGGATG | 4575 | 0.0 | 75.80996 | 5 |
TAGGGCA | 1415 | 0.0 | 75.39289 | 4 |
CTACGAC | 1140 | 0.0 | 73.37974 | 5 |
CGAAGGG | 2125 | 0.0 | 72.140114 | 2 |
ACGGGTA | 335 | 0.0 | 71.546165 | 4 |
AGGGAAT | 2790 | 0.0 | 70.40979 | 5 |
GGATGGC | 3645 | 0.0 | 70.397316 | 7 |
GAATAGG | 1540 | 0.0 | 69.96805 | 1 |
GGTAAGG | 1265 | 0.0 | 69.92819 | 1 |
TCCGCTA | 1235 | 0.0 | 69.721886 | 1 |
AGAGGGC | 3215 | 0.0 | 68.84952 | 3 |
ACGACCA | 1195 | 0.0 | 68.82261 | 7 |
TAGAGGG | 4195 | 0.0 | 68.60213 | 2 |
AGTAAGG | 1320 | 0.0 | 68.44035 | 1 |
GAGGGAT | 3150 | 0.0 | 68.18151 | 4 |
AGGGTAC | 1065 | 0.0 | 67.95667 | 5 |
TACGACC | 1235 | 0.0 | 67.73514 | 6 |
ATAGGGA | 2355 | 0.0 | 67.45075 | 3 |