Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127313.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2968837 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 35524 | 1.196562829148249 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 11875 | 0.0 | 86.20088 | 1 |
ATAGGGC | 1835 | 0.0 | 73.259384 | 3 |
GAATAGG | 1815 | 0.0 | 71.76126 | 1 |
GTAGGGT | 885 | 0.0 | 71.16965 | 3 |
TATAGGG | 2575 | 0.0 | 70.09503 | 2 |
CGTAGGG | 645 | 0.0 | 69.95919 | 2 |
ATAGCGG | 515 | 0.0 | 69.38943 | 1 |
AGATAGG | 1745 | 0.0 | 68.981316 | 1 |
AGGGATG | 4365 | 0.0 | 68.81089 | 5 |
AGGGCAT | 2365 | 0.0 | 68.37036 | 5 |
TAGGGCA | 1625 | 0.0 | 68.265175 | 4 |
GGTAAGG | 1665 | 0.0 | 67.777245 | 1 |
TAGAGGG | 5670 | 0.0 | 67.72862 | 2 |
TAAGGGA | 2480 | 0.0 | 67.66277 | 3 |
AGTAGGG | 4925 | 0.0 | 66.61659 | 2 |
AGTAAGG | 1940 | 0.0 | 66.41035 | 1 |
ATAGGGA | 2915 | 0.0 | 65.950485 | 3 |
TAGGGTA | 920 | 0.0 | 65.90866 | 4 |
AAGAGGG | 11490 | 0.0 | 65.90354 | 2 |
AGAAGGG | 11200 | 0.0 | 65.42766 | 2 |