SRR3127285.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127285.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1054070
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11952	1.1338905385790319	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	7675	0.7281300103408692	No Hit
GCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTG	2372	0.22503249309818135	TruSeq Adapter, Index 13 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTG	2360	0.22389404878233893	TruSeq Adapter, Index 13 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC	2208	0.20947375411500185	TruSeq Adapter, Index 8 (95% over 23bp)
GGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCC	1892	0.17949472046448528	No Hit
TCCGCTACGACCAACTCATACACCTGTCTCTTATACACATCTGACGCCAG	1490	0.14135683588376485	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCTACG	1150	87.72679	3
CGTTTTT	5000	86.87857	1
AGGGATG	3805	83.241356	5
GGATGGC	3240	83.10812	7
GCTACGA	1210	82.9871	4
CGAAGGG	700	82.836815	2
TCCGCTA	1225	82.78	1
CGTAGGG	280	82.50008	2
ATTGCGG	195	82.23702	1
TCACGGG	105	80.81641	2
TAGCGGG	545	80.445694	2
CTACGAC	1265	79.86965	5
TTGACGG	65	79.81828	1
CGGGTAT	165	79.74583	5
AGGGAAT	2105	79.47522	5
GATGGCA	3230	79.00074	8
AAGGGAT	2830	78.79362	4
GCGGGTA	210	78.57151	4
CGGGATG	655	78.20222	5
TACGACC	1295	77.65651	6