SRR3127284.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127284.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1079295
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11504	1.0658809685952404	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	8000	0.7412245956851463	No Hit
GCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTG	2500	0.2316326861516082	TruSeq Adapter, Index 13 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTG	2369	0.21949513339726395	TruSeq Adapter, Index 13 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC	2344	0.21717880653574786	TruSeq Adapter, Index 8 (95% over 23bp)
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCCAGGACTC	2097	0.19429349714396899	No Hit
GGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCC	1900	0.17604084147522225	No Hit
TCCGCTACGACCAACTCATACACCTGTCTCTTATACACATCTGACGCCAG	1536	0.1423151223715481	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	1121	0.10386409647038114	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	115	93.99764	5
CGTTTTT	4785	87.34177	1
TAGGGCG	235	85.99783	4
AGGGATG	3685	85.70748	5
AGCGGGT	230	83.78051	3
GGATGGC	3255	83.024025	7
CTACGAC	1360	82.93909	5
GCTACGA	1355	82.898285	4
CGCTACG	1350	82.85718	3
TCCGCTA	1375	82.833046	1
GATGGCA	3130	82.28547	8
ATAGCGG	150	81.578	1
TAGCGGG	520	81.40067	2
ACGACCA	1395	79.84745	7
TCACGGG	95	79.21095	2
TACGACC	1430	79.207794	6
CGAAGGG	805	78.8727	2
ATCGCGG	90	78.44039	1
AGGGAAT	2085	77.99324	5
AGGGATT	1605	77.89212	5