Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127280.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3371108 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 47286 | 1.4026842213301975 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 15255 | 0.0 | 86.30059 | 1 |
CGTAGGG | 975 | 0.0 | 74.24515 | 2 |
GAATAGG | 2335 | 0.0 | 71.4841 | 1 |
AGTAGGG | 5965 | 0.0 | 71.08011 | 2 |
AGGGATG | 5310 | 0.0 | 70.64367 | 5 |
AGATAGG | 2025 | 0.0 | 70.12129 | 1 |
ATAGGGC | 2120 | 0.0 | 69.40119 | 3 |
TATAGGG | 3050 | 0.0 | 69.19879 | 2 |
TAGGGTA | 1165 | 0.0 | 68.19078 | 4 |
GTAGGGT | 1400 | 0.0 | 67.15223 | 3 |
ATAGGGA | 3315 | 0.0 | 66.7876 | 3 |
ACGGGTA | 290 | 0.0 | 66.45853 | 4 |
AGTACGG | 610 | 0.0 | 66.28826 | 1 |
TAGAGGG | 6090 | 0.0 | 66.14782 | 2 |
TGTAGGG | 2560 | 0.0 | 66.10199 | 2 |
GATAGGG | 5225 | 0.0 | 66.03311 | 2 |
TAGGGCA | 1805 | 0.0 | 65.36743 | 4 |
AGTAAGG | 2395 | 0.0 | 65.177925 | 1 |
AAGAGGG | 12380 | 0.0 | 65.117165 | 2 |
ATAAGGG | 4585 | 0.0 | 64.99829 | 2 |