SRR3127269.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127269.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	931638
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11421	1.2259053409156775	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	6321	0.6784824148435337	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCTCGACATC	2963	0.3180419862650514	No Hit
CTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCTTCTGC	2781	0.2985065014522808	RNA PCR Primer, Index 41 (96% over 26bp)
CCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCTTCTG	2718	0.29174421824786023	RNA PCR Primer, Index 41 (96% over 25bp)
GCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCTTCTG	2658	0.2853039485293644	Illumina PCR Primer Index 11 (95% over 24bp)
GGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCC	1473	0.15810862158907216	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	1451	0.155747189358957	No Hit
TCCGCTACGACCAACTCATACACCTGTCTCTTATACACATCTGACGCTCG	1135	0.12182843550821242	No Hit
TAGACCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCT	985	0.1057277612119729	No Hit
CGCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCTTCT	985	0.1057277612119729	RNA PCR Primer, Index 41 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	4830	88.40297	1
ACGGGTA	135	87.02948	4
CGCTACG	1030	85.77897	3
GCTACGA	1030	85.32269	4
AGGGATG	2580	85.24841	5
CGGGATG	575	84.184	5
TAAACGG	90	83.69205	1
GTACGGG	170	83.00526	2
GGATGGC	2275	82.21704	7
TAGCGGG	510	82.08298	2
CGAGGGA	625	81.960884	3
ATAGCGG	225	81.59975	1
CTACGAC	1080	80.937416	5
TCCGCTA	1100	80.45849	1
GATGGCA	2180	80.41045	8
AGGGAAT	1910	80.21293	5
TAACGGG	265	79.872986	2
GTTACGG	65	79.66839	1
CGACCAA	1075	79.56519	8
AGCGGGA	705	79.32645	3