Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127246.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2838393 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 32472 | 1.1440276240816547 | No Hit |
CTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC | 3256 | 0.11471279699463748 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 10915 | 0.0 | 86.084656 | 1 |
TAGGGCA | 1420 | 0.0 | 74.36464 | 4 |
CGTAGGG | 800 | 0.0 | 72.48062 | 2 |
AGGGATG | 4255 | 0.0 | 71.56664 | 5 |
AGGGCAT | 2515 | 0.0 | 70.62997 | 5 |
ATAGGGC | 1635 | 0.0 | 69.775734 | 3 |
TAAGGGA | 2405 | 0.0 | 68.99766 | 3 |
TATAGGG | 2330 | 0.0 | 68.79071 | 2 |
AGTAGGG | 4715 | 0.0 | 68.78813 | 2 |
GAATAGG | 1695 | 0.0 | 68.736496 | 1 |
ATAGGGA | 2585 | 0.0 | 66.92869 | 3 |
ATAAGGG | 4055 | 0.0 | 66.731026 | 2 |
AGTAAGG | 1710 | 0.0 | 66.47848 | 1 |
CGAAGGG | 3420 | 0.0 | 66.301865 | 2 |
AAGGGCA | 4100 | 0.0 | 66.113594 | 4 |
ATGAGGG | 4700 | 0.0 | 66.098915 | 2 |
TAGAGGG | 4915 | 0.0 | 66.08494 | 2 |
ATAGCGG | 615 | 0.0 | 65.96043 | 1 |
ATAGAGG | 1995 | 0.0 | 65.49332 | 1 |
AGGGAAT | 2880 | 0.0 | 65.431526 | 5 |