Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127240.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2334278 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 32894 | 1.409172343654012 | No Hit |
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC | 2792 | 0.11960871841314531 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 10780 | 0.0 | 87.36496 | 1 |
ATAGGGC | 1395 | 0.0 | 73.966415 | 3 |
TAGGGCA | 1165 | 0.0 | 73.60548 | 4 |
TAGAGGG | 3775 | 0.0 | 72.76395 | 2 |
AGGGATG | 3560 | 0.0 | 71.41577 | 5 |
GAGGGAT | 2940 | 0.0 | 69.71185 | 4 |
AGTAGGG | 4005 | 0.0 | 69.64402 | 2 |
AGAGGGC | 3465 | 0.0 | 69.21165 | 3 |
GGTAAGG | 1320 | 0.0 | 68.919785 | 1 |
ATAGAGG | 1530 | 0.0 | 67.77847 | 1 |
AGGGCAT | 2175 | 0.0 | 66.54851 | 5 |
CGAAGGG | 2705 | 0.0 | 65.665726 | 2 |
GCATAGG | 675 | 0.0 | 65.642426 | 1 |
AGATAGG | 1390 | 0.0 | 65.44901 | 1 |
ATAAGGG | 3080 | 0.0 | 65.319336 | 2 |
AGTAAGG | 1545 | 0.0 | 65.28988 | 1 |
AGGGAAT | 2405 | 0.0 | 65.26469 | 5 |
ATAGCGG | 545 | 0.0 | 64.867226 | 1 |
TATAGGG | 2055 | 0.0 | 64.65497 | 2 |
TAAGGGA | 1825 | 0.0 | 64.54191 | 3 |