Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127236.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2761436 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 31449 | 1.1388639823627997 | No Hit |
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC | 5258 | 0.19040817893298995 | No Hit |
CTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC | 3214 | 0.11638871949232212 | No Hit |
CCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTG | 3128 | 0.11327439781331163 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 11440 | 0.0 | 85.07667 | 1 |
AGGGATG | 4250 | 0.0 | 74.3109 | 5 |
CGTAGGG | 660 | 0.0 | 74.107216 | 2 |
GTACGGG | 670 | 0.0 | 72.2992 | 2 |
TAGGGCA | 1520 | 0.0 | 71.11421 | 4 |
TAGAGGG | 4855 | 0.0 | 70.52016 | 2 |
CGAAGGG | 2525 | 0.0 | 69.84591 | 2 |
GAGGGAT | 3770 | 0.0 | 69.56087 | 4 |
ACGGGTA | 225 | 0.0 | 68.92925 | 4 |
TAAGGGA | 2440 | 0.0 | 68.76233 | 3 |
TAAGAGG | 2000 | 0.0 | 68.71299 | 1 |
AGTAAGG | 1760 | 0.0 | 68.456276 | 1 |
ATAGGGC | 1465 | 0.0 | 68.33043 | 3 |
ATAGGGA | 2320 | 0.0 | 68.26752 | 3 |
GGTAAGG | 1770 | 0.0 | 68.06952 | 1 |
CTACGAC | 1230 | 0.0 | 67.248055 | 5 |
ATAGAGG | 2025 | 0.0 | 67.16744 | 1 |
AGAGGGA | 6295 | 0.0 | 67.0429 | 3 |
AAGGGTA | 1700 | 0.0 | 66.901924 | 4 |
AAGAGGG | 10140 | 0.0 | 66.880325 | 2 |