SRR3127202.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127202.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2550425
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25619	1.0044992501249792	No Hit
CTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTGC	6658	0.2610545301273317	No Hit
GCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTG	5187	0.20337786839448327	TruSeq Adapter, Index 14 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTG	4818	0.18890969152200124	TruSeq Adapter, Index 14 (95% over 21bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3953	0.15499377554721272	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	3136	0.12295989884038934	No Hit
CGCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCT	2950	0.1156669966770244	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	8575	85.60915	1
TAGGGCA	1235	75.17712	4
ACGGGAT	660	73.54949	4
GTACGGG	605	73.22923	2
ATAGGGA	2095	71.5368	3
AGGGATG	3780	70.863815	5
TAGAGGG	3915	70.54688	2
AGAGGGC	3630	70.23879	3
AGGGCAT	2460	70.10879	5
CGTAGGG	580	69.88475	2
AGTAAGG	1570	69.671326	1
GAGGGTA	1625	69.02556	4
GTAGGGA	1940	68.99267	3
CGAAGGG	2465	68.64194	2
AGGGAAT	3400	68.55581	5
ATGCGGG	1150	68.44325	2
AGGGACT	3545	67.87272	5
ATAGAGG	1670	67.75799	1
TAAGGGA	1955	67.74011	3
AGTAGGG	4120	67.723045	2