SRR3127201.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127201.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2619779
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26587	1.014856596682392	No Hit
CTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTGC	6751	0.25769349246634926	No Hit
GCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTG	4916	0.18764941622938422	TruSeq Adapter, Index 14 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTG	4761	0.18173288662898665	TruSeq Adapter, Index 14 (95% over 21bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	4100	0.15650175072019434	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	3292	0.12565945448070237	No Hit
CGCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCT	2833	0.10813889263178306	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	8155	85.93581	1
CGTAGGG	680	73.97565	2
AGGGATG	3770	73.17479	5
TAGGGCA	1190	73.061646	4
TAGGGCG	380	72.96812	4
ATAGGGA	2335	72.25573	3
AGTAGGG	4015	70.372475	2
GGTAAGG	1465	70.036156	1
AGAGGGC	4135	70.01158	3
ATAGCGG	540	69.72678	1
TAAGGGA	2195	69.58466	3
AGGGCAT	2655	69.565315	5
GTAGGGA	1915	69.45162	3
TAGCGGG	1165	69.4091	2
CGAAGGG	2685	68.98678	2
ATAGAGG	1805	68.577545	1
AGGGAAT	3345	68.14128	5
AGGGTAG	1390	67.95884	5
AGTAAGG	1650	67.88853	1
TAGACGG	430	67.862	1