Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127194.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3207033 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 33210 | 1.0355365847498295 | No Hit |
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC | 7614 | 0.23741570479630236 | No Hit |
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT | 4144 | 0.12921600744364026 | No Hit |
GCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTG | 4129 | 0.1287482854089746 | No Hit |
CCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTG | 4027 | 0.12556777557324791 | No Hit |
CTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGC | 3809 | 0.11877021533610661 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 10810 | 0.0 | 81.94128 | 1 |
CGTAGGG | 860 | 0.0 | 77.048645 | 2 |
AGGGATG | 6310 | 0.0 | 75.7454 | 5 |
ATAGGGA | 3075 | 0.0 | 72.290405 | 3 |
GTAGGGT | 1225 | 0.0 | 71.741455 | 3 |
TAGGGCA | 1805 | 0.0 | 71.08044 | 4 |
ATAGGGC | 2090 | 0.0 | 70.60705 | 3 |
GTAGGGA | 2755 | 0.0 | 68.91669 | 3 |
GGTAAGG | 1755 | 0.0 | 68.84994 | 1 |
AAGGGAT | 5935 | 0.0 | 68.57437 | 4 |
TAAGGGA | 3030 | 0.0 | 68.55582 | 3 |
AGGGAAT | 4145 | 0.0 | 68.25533 | 5 |
AGTAGGG | 5005 | 0.0 | 68.16742 | 2 |
AGGGCAT | 3035 | 0.0 | 68.13318 | 5 |
TAGGGTA | 1220 | 0.0 | 67.798096 | 4 |
GTAGGGC | 1700 | 0.0 | 67.73012 | 3 |
ACGGGAT | 1160 | 0.0 | 67.25348 | 4 |
TATAGGG | 2410 | 0.0 | 66.88387 | 2 |
ATAGCGG | 710 | 0.0 | 66.8822 | 1 |
TAAGAGG | 2330 | 0.0 | 66.79125 | 1 |