Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127177.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1139623 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12126 | 1.0640360891277203 | No Hit |
GCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTG | 3422 | 0.3002747399798003 | No Hit |
CCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTG | 2820 | 0.24745025328551637 | No Hit |
CTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC | 2678 | 0.2349899923044726 | No Hit |
GGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCC | 1347 | 0.11819698268637961 | No Hit |
AGCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCT | 1166 | 0.10231453735138726 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 4070 | 0.0 | 86.14393 | 1 |
AGGGATG | 2705 | 0.0 | 81.65867 | 5 |
GGTAAGG | 710 | 0.0 | 78.214355 | 1 |
AGGGTAC | 445 | 0.0 | 74.984245 | 5 |
AGGGAAT | 1825 | 0.0 | 74.93795 | 5 |
GGATGGC | 2020 | 0.0 | 74.450966 | 7 |
ACGGGTA | 95 | 0.0 | 74.20606 | 4 |
GTAGGGC | 655 | 0.0 | 73.903946 | 3 |
ATAGCGG | 255 | 0.0 | 73.82146 | 1 |
GTAGGGT | 310 | 0.0 | 72.769806 | 3 |
AAGGGCG | 460 | 0.0 | 72.539116 | 4 |
TAGCGGG | 675 | 0.0 | 71.751976 | 2 |
ATGGCAC | 1900 | 0.0 | 71.73252 | 9 |
GATGACC | 1535 | 0.0 | 71.33772 | 8 |
GGGAATG | 2180 | 0.0 | 70.926926 | 6 |
TAGGGTA | 325 | 0.0 | 70.85727 | 4 |
GTACGGG | 200 | 0.0 | 70.53289 | 2 |
GAGGGAT | 1865 | 0.0 | 70.30676 | 4 |
AGCAGGG | 2020 | 0.0 | 70.30011 | 2 |
AAGGGCA | 1545 | 0.0 | 70.26762 | 4 |