Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127166.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2470111 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 45556 | 1.8442895886055324 | No Hit |
CGTTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTT | 4001 | 0.16197652656095213 | No Hit |
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT | 3679 | 0.1489406751356518 | No Hit |
CGTTTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCT | 3001 | 0.12149251592337348 | No Hit |
CGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCT | 2871 | 0.11622959454048827 | No Hit |
CCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTG | 2797 | 0.11323377775330744 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 13665 | 0.0 | 88.09047 | 1 |
ATAGGGC | 1450 | 0.0 | 73.44822 | 3 |
TAGGGCA | 1130 | 0.0 | 71.72835 | 4 |
GTAGGGC | 1070 | 0.0 | 71.346405 | 3 |
ATAGGGA | 2035 | 0.0 | 69.70163 | 3 |
AGATAGG | 1300 | 0.0 | 69.63789 | 1 |
GAATAGG | 1245 | 0.0 | 68.54834 | 1 |
TAGAGGG | 4445 | 0.0 | 68.38134 | 2 |
GTACGGG | 595 | 0.0 | 68.113174 | 2 |
ATAGCGG | 585 | 0.0 | 67.70351 | 1 |
TATAGGG | 2055 | 0.0 | 67.41944 | 2 |
AGGGAAT | 2420 | 0.0 | 67.38414 | 5 |
AGTAAGG | 1625 | 0.0 | 67.02647 | 1 |
AGTAGGG | 3840 | 0.0 | 66.39199 | 2 |
ATAGAGG | 1930 | 0.0 | 66.20636 | 1 |
AAGAGGG | 8815 | 0.0 | 66.18323 | 2 |
AGGGATG | 3350 | 0.0 | 65.93206 | 5 |
ACGGGAT | 495 | 0.0 | 65.6878 | 4 |
AGGGCAT | 2035 | 0.0 | 65.58395 | 5 |
GAGGGAT | 2770 | 0.0 | 65.497055 | 4 |