SRR3126996.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126996.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	904263
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14008	1.5491068417042386	No Hit
GCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTG	3799	0.4201211373239865	Illumina PCR Primer Index 2 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTG	3403	0.3763285681267507	Illumina PCR Primer Index 2 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGC	3013	0.3331995227052307	Illumina PCR Primer Index 2 (95% over 24bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1439	0.15913511887581377	No Hit
AGCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCT	1305	0.1443164212181633	Illumina PCR Primer Index 2 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCT	1019	0.11268845457571525	Illumina PCR Primer Index 2 (95% over 22bp)
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	916	0.10129796309259584	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	3955	0.0	87.2726	1
GTAGGGC	280	0.0	85.605225	3
TAGACGG	100	0.0	84.64491	1
CGTAGGG	195	0.0	81.946884	2
GTAGGGT	375	0.0	77.704926	3
GTACGGG	140	0.0	77.212555	2
GGTAAGG	415	0.0	77.05293	1
AGGGAAT	1325	0.0	76.97611	5
AGTAGGG	1230	0.0	76.42106	2
GACCGAT	80	0.0	76.37752	8
TAGGGTC	210	0.0	76.10195	4
TACGGGT	25	5.559352E-5	75.198326	3
ACGGGAT	220	0.0	74.77933	4
GTAGGGA	685	0.0	73.41442	3
TAGGGCA	375	0.0	72.699745	4
CGAAGGG	805	0.0	72.3959	2
AGGGCTC	655	0.0	71.75809	5
AGAGGGC	1085	0.0	70.60671	3
TGTAGGG	575	0.0	70.294075	2
TAGTAGG	295	0.0	70.138916	1