SRR3126990.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126990.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1058867
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

$Per base sequence content$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12317	1.1632244653955597	No Hit
GCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTG	3633	0.34310258039961583	TruSeq Adapter, Index 13 (95% over 22bp)
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	3149	0.29739334590652083	No Hit
CCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTG	3062	0.28917701656581984	TruSeq Adapter, Index 13 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC	2782	0.2627336577681616	TruSeq Adapter, Index 8 (95% over 23bp)
AGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCT	1259	0.11890067402232764	TruSeq Adapter, Index 8 (95% over 21bp)
AAAGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTT	1237	0.11682298154536877	No Hit
GGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCT	1060	0.10010700116256338	TruSeq Adapter, Index 13 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	4285	0.0	85.69709	1
CGGGTAT	205	0.0	84.826035	5
TCCGCTA	585	0.0	82.78416	1
CGTAGGG	245	0.0	80.56835	2
ACGGGTA	160	0.0	79.30947	4
AGTAGCG	30	1.456392E-6	78.330345	9
GTACGGG	180	0.0	78.330345	2
TAGGGCA	615	0.0	77.184044	4
AGGGATG	2105	0.0	76.80467	5
CGCTACG	630	0.0	76.09233	3
CTACGAC	635	0.0	75.49319	5
CGGGTAA	100	0.0	75.19713	5
GGTAAGG	615	0.0	74.92329	1
GTAGGGA	865	0.0	73.893135	3
GGGCGAT	340	0.0	73.26191	6
GACCGAT	90	0.0	73.10832	8
AGGGCAT	1025	0.0	72.90453	5
AGGGTAT	935	0.0	72.88492	5
TAGACGG	155	0.0	72.80236	1
TACGACC	670	0.0	72.25098	6