Basic Statistics
Measure | Value |
---|---|
Filename | SRR3126982.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2613436 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 66332 | 2.5381145740703044 | No Hit |
CGTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTT | 6372 | 0.2438169520891271 | No Hit |
CGTTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCT | 5304 | 0.2029512105901962 | No Hit |
CGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCT | 4938 | 0.18894665872820304 | No Hit |
CCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTG | 3654 | 0.13981593580252205 | No Hit |
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT | 3091 | 0.1182734147689096 | No Hit |
CTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC | 2815 | 0.10771260516806228 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 19910 | 0.0 | 89.7439 | 1 |
ATAGGGC | 1510 | 0.0 | 74.69401 | 3 |
AGTAGGG | 3985 | 0.0 | 73.50957 | 2 |
AGGGATG | 3360 | 0.0 | 72.73032 | 5 |
TAGGGAT | 1465 | 0.0 | 68.968735 | 4 |
TAGCGGG | 1400 | 0.0 | 68.5151 | 2 |
GTAGGGA | 1765 | 0.0 | 68.42895 | 3 |
AGAGGGC | 4155 | 0.0 | 68.42831 | 3 |
AGGGAAT | 2720 | 0.0 | 68.24638 | 5 |
ATAGCGG | 615 | 0.0 | 68.11847 | 1 |
AGGGCAT | 1990 | 0.0 | 68.01283 | 5 |
GTAGGGC | 1175 | 0.0 | 67.99273 | 3 |
AGATAGG | 1215 | 0.0 | 67.797195 | 1 |
GAATAGG | 1465 | 0.0 | 67.47325 | 1 |
ATAGGGA | 2050 | 0.0 | 67.397675 | 3 |
GTAGGGT | 795 | 0.0 | 67.38903 | 3 |
ATGCGGG | 1250 | 0.0 | 66.58056 | 2 |
TAGGGCA | 1305 | 0.0 | 65.901 | 4 |
GAGGGAT | 2850 | 0.0 | 65.79297 | 4 |
ATAAGGG | 3670 | 0.0 | 65.59762 | 2 |