SRR3126973.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126973.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1195494
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13601	1.1376886876889387	No Hit
GCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCTTCTG	4176	0.34931166530321356	Illumina PCR Primer Index 11 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCTTCTG	3492	0.2920968235725148	RNA PCR Primer, Index 41 (96% over 25bp)
CTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCTTCTGC	3159	0.264242229572043	RNA PCR Primer, Index 41 (96% over 26bp)
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2879	0.24082094933140613	No Hit
AGCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCTTCT	1377	0.11518251032627516	RNA PCR Primer, Index 41 (95% over 24bp)
AAAGCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCTT	1357	0.11350956173765823	RNA PCR Primer, Index 41 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCTTCT	1309	0.10949448512497763	RNA PCR Primer, Index 41 (95% over 24bp)
GGCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCTTCT	1241	0.10380645992368008	RNA PCR Primer, Index 41 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	4175	84.977066	1
ATAGCGG	210	78.421585	1
TAGCGGG	530	78.06028	2
AGGGTAC	740	76.84461	5
TAGGGCG	155	75.799805	4
ATAGGGA	1020	74.64052	3
TAGGGTC	265	74.48404	4
GGTAAGG	995	74.244354	1
AGGGAAT	1735	74.21828	5
AGACGGG	725	73.27633	2
ACGGGAT	315	71.61277	4
CGAAGGG	820	71.093704	2
AGGGATG	1760	71.02786	5
AAGGGTA	935	70.8708	4
AGTAGGG	1675	70.450195	2
GAGGGTA	715	70.3295	4
AGAGGGC	1510	69.715744	3
AGGGTAT	715	69.67221	5
GATAGGG	1670	69.53505	2
CGAGGGA	710	69.50095	3