SRR3126969.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126969.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3219208
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	87769	2.726415938330173	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTT	7103	0.22064433239480022	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCT	6448	0.20029771297785043	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	4881	0.15162114408264393	No Hit
CGCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCT	4825	0.14988158578134747	TruSeq Adapter, Index 15 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTG	4439	0.13789105891883968	No Hit
CTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC	3323	0.10322414705728862	TruSeq Adapter, Index 15 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	27380	89.64906	1
TAGGGCA	1630	74.97272	4
AGTAGGG	5100	71.51363	2
AGGGATG	4555	70.889046	5
GTAGGGC	1770	69.0416	3
CGTAGGG	970	68.319496	2
ACGGGAT	860	68.31705	4
GAATAGG	1890	67.90884	1
ATAGGGC	1955	67.79741	3
TAGAGGG	5805	67.11964	2
TGTAGGG	2035	66.74685	2
GTAGGGA	2345	66.74399	3
GGTAAGG	1875	66.44619	1
ATAGGGA	2600	66.163506	3
AGGGACT	4135	65.35865	5
AGATAGG	1550	65.21271	1
AAGAGGG	10550	64.90892	2
AGAGGGC	4670	64.71499	3
AGGGCAT	2645	64.68245	5
GAGGGAT	3760	64.502914	4