SRR3126932.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126932.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10585319
Sequences flagged as poor quality	0
Sequence length	100
%GC	48

Per base quality graph

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	341306	3.224333626601145	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	58683	0.5543810252671648	No Hit
CGCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCT	23687	0.223772188632199	RNA PCR Primer, Index 16 (95% over 23bp)
CGTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTT	19304	0.18236578415822896	No Hit
CCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTG	18019	0.17022632950409902	RNA PCR Primer, Index 16 (95% over 24bp)
CGTTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCT	17737	0.16756226241268685	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	16906	0.15971176683480204	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	15406	0.1455411971996309	No Hit
CTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC	11413	0.10781914083080539	RNA PCR Primer, Index 16 (96% over 25bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	106845	90.59409	1
ATAGGGC	5260	72.97839	3
AGGGACT	26425	72.02629	5
AGTAGGG	15040	70.90145	2
GTTTTTT	141220	69.07333	2
TAGTAGG	3755	67.902115	1
GGTAAGG	5930	67.55542	1
ATAGGGA	6145	67.450195	3
TATAGGG	6880	67.227905	2
ATAGAGG	6600	67.12431	1
AGATAGG	5495	66.81373	1
TAGGGAC	4745	66.80382	4
AATAGGG	12690	66.02994	2
GTAGGGA	6895	65.851425	3
CAGGGAC	23780	65.639175	4
TAGGGCA	3835	65.46124	4
AAGGGGC	34595	65.432396	4
ACGGGAT	1950	64.491	4
GTATAGG	3070	64.4773	1
GGATAGG	5580	64.27564	1