Basic Statistics
Measure | Value |
---|---|
Filename | SRR3126917.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2314210 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 65337 | 2.8232960707973778 | No Hit |
CGCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCT | 7981 | 0.3448693074526512 | TruSeq Adapter, Index 27 (100% over 22bp) |
CCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTG | 6585 | 0.28454634626935327 | TruSeq Adapter, Index 27 (95% over 24bp) |
CTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGC | 5858 | 0.2531317382605727 | TruSeq Adapter, Index 27 (100% over 24bp) |
CGTTCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTT | 4204 | 0.18166026419382855 | No Hit |
CGTTTCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCT | 3448 | 0.14899252876791647 | No Hit |
GCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTG | 2658 | 0.11485560947364327 | TruSeq Adapter, Index 27 (95% over 24bp) |
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT | 2455 | 0.10608371755372244 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 22940 | 0.0 | 89.66086 | 1 |
AGGGATG | 3750 | 0.0 | 78.07614 | 5 |
ACGGGAT | 665 | 0.0 | 75.61773 | 4 |
TAGGGCA | 1200 | 0.0 | 74.80208 | 4 |
GAGGGAT | 2770 | 0.0 | 73.97215 | 4 |
GAATAGG | 1525 | 0.0 | 71.586914 | 1 |
GGTAAGG | 1325 | 0.0 | 71.38314 | 1 |
AGGGAAT | 2880 | 0.0 | 70.820465 | 5 |
TAGGGCG | 425 | 0.0 | 70.77055 | 4 |
AGTAGGG | 3325 | 0.0 | 70.67078 | 2 |
GTAGGGC | 1090 | 0.0 | 70.27853 | 3 |
AAGGGAT | 3855 | 0.0 | 70.2198 | 4 |
ATAGGGC | 1460 | 0.0 | 70.17221 | 3 |
AAGGGTA | 1335 | 0.0 | 70.05407 | 4 |
AGGGCAT | 1880 | 0.0 | 69.99414 | 5 |
TAGCGGG | 1075 | 0.0 | 69.94763 | 2 |
TAGAGGG | 4260 | 0.0 | 69.72186 | 2 |
AGTAAGG | 1195 | 0.0 | 69.69808 | 1 |
AGGGTAC | 910 | 0.0 | 69.203 | 5 |
CGTAGGG | 640 | 0.0 | 69.025475 | 2 |