SRR3126916.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126916.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1411353
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7824	0.5543616657207658	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	6025	0.42689532668297725	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	4959	0.35136496680844553	No Hit
GCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTG	3408	0.2414704188108857	TruSeq Adapter, Index 23 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTG	3018	0.21383736032020337	TruSeq Adapter, Index 23 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC	2993	0.21206601041695453	TruSeq Adapter, Index 20 (95% over 23bp)
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGG	2358	0.16707372287443326	No Hit
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	1973	0.13979493436440069	No Hit
AAAGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTT	1487	0.1053598922452427	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATAGCGG	265	89.05186	1
CGTTTTT	3475	86.38158	1
TAGCGGG	730	85.2918	2
AGGGATG	3180	84.67393	5
ACGGGTA	135	83.8559	4
ACGGGAT	575	83.673615	4
CGGGAAC	270	83.541	5
TACGACC	1205	83.454346	6
CGGGATA	345	83.08698	5
CGCTACG	1235	82.11598	3
CGTAGGG	460	82.03295	2
GCTACGA	1240	81.784874	4
AAGGGCA	1605	81.70073	4
TCCGCTA	1255	81.60839	1
CGAGGGA	695	80.7641	3
AGCGGGA	980	80.379745	3
AGGGCAT	1350	80.060135	5
CTACGAC	1280	78.931564	5
CGAAGGG	1220	78.87267	2
TACGGGT	90	78.614914	3