SRR3126915.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126915.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1419976
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7439	0.5238820937818667	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	5840	0.4112745567530719	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	4791	0.33740006873355605	No Hit
GCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTG	3273	0.23049685346794593	TruSeq Adapter, Index 23 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTG	3086	0.21732761680479107	TruSeq Adapter, Index 23 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC	2942	0.2071866003369071	TruSeq Adapter, Index 20 (95% over 23bp)
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGG	2391	0.16838312760215665	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCGGACCTTA	2300	0.16197456858425774	No Hit
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	1993	0.14035448486453292	No Hit
AAAGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTT	1425	0.10035380879676839	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATAGCGG	220	85.5513	1
TCCGCTA	1040	85.51018	1
AGGGATG	3055	85.07128	5
CGTTTTT	3470	84.47883	1
TACGGGT	90	83.55002	3
CGCTACG	1070	83.452415	3
ACGGGTA	120	82.244545	4
CGTAGGG	310	81.91458	2
GCTACGA	1090	81.49001	4
TAGGGCG	225	81.46126	4
ACGGGAT	505	80.0343	4
TAGGGCA	840	80.0066	4
CTACGAC	1115	79.66289	5
GGGCGAT	545	79.3342	6
TAACGGG	485	78.53666	2
GATAAGG	925	78.33724	1
TACGACC	1140	77.915886	6
CGAAGGG	1135	77.891685	2
AAGGGTC	605	77.6808	4
TAGCGGG	635	77.01737	2