SRR3126914.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126914.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1470361
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7689	0.5229328035768086	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	6281	0.4271740069275504	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	4968	0.33787620863175777	No Hit
GCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTG	3581	0.24354563267116033	TruSeq Adapter, Index 23 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTG	3201	0.21770163925729805	TruSeq Adapter, Index 23 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC	3025	0.20573178967614075	TruSeq Adapter, Index 20 (95% over 23bp)
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGG	2366	0.1609128642557848	No Hit
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	1993	0.13554494440480944	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCGGACCTTA	1767	0.12017456937445975	No Hit
AAAGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTT	1636	0.11126519269757562	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACGGGAT	615	86.34751	4
CGTTTTT	3780	83.91988	1
AGGGATG	3420	83.13627	5
TCCGCTA	1185	82.21457	1
GCTACGA	1195	81.79785	4
CGCTACG	1185	81.69498	3
GCGAAGG	510	81.20996	1
GGATGGC	2250	80.62431	7
TAGGGCG	245	80.5619	4
AGGGCAT	1390	80.12994	5
TAGGGCA	800	79.303116	4
AGGGCAA	1215	79.293724	5
AAGGGCA	1955	78.844894	4
AACGGGA	720	78.324066	3
GAACGGG	840	78.324066	2
CTACGAC	1250	78.20141	5
CGAAGGG	1180	78.05856	2
AGCGGGA	960	77.83454	3
AATGCGG	310	77.42929	1
GCACCGA	85	77.405235	8