SRR3126908.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126908.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3036173
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29478	0.9708932923123945	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	4919	0.16201316591643494	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	4803	0.15819256676085322	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	4161	0.13704752660668545	No Hit
CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	3664	0.12067823539699483	TruSeq Adapter, Index 21 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTG	3458	0.11389337827587558	TruSeq Adapter, Index 15 (95% over 21bp)
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	3388	0.11158784430267972	No Hit
CCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTG	3094	0.1019046016152571	TruSeq Adapter, Index 15 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	10645	86.54837	1
ATAGCGG	575	78.558876	1
AGGGATG	4610	76.45921	5
TAGGGCA	1700	73.81283	4
AGGGTAC	1435	73.033554	5
TAGCGGG	1515	72.89953	2
ACGGGTA	375	72.68858	4
ACGGGAT	895	71.93944	4
CGTAGGG	870	71.84588	2
CGAAGGG	2750	71.09354	2
GGTAAGG	1730	70.71623	1
AGTAAGG	1795	70.51471	1
AGGGCAT	2565	70.17475	5
ATAGGGC	1970	70.13754	3
AGAGGGC	4075	69.659256	3
AAGGGTA	2100	69.37642	4
ATAGAGG	2240	69.31988	1
AATGCGG	815	69.28122	1
AGTAGGG	4690	69.042404	2
TAAGGGA	2635	68.488884	3