SRR3126900.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126900.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1961173
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13781	0.702691705423234	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	4634	0.2362871607961154	No Hit
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	3016	0.15378551509734223	No Hit
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGG	2610	0.13308361883423847	No Hit
CCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTG	2583	0.13170689174284983	No Hit
CTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGC	2527	0.12885145777552515	No Hit
GCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTG	2499	0.12742374079186283	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2362	0.12043812555037214	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2243	0.11437032836980725	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	5660	85.43825	1
ACGGGAT	465	82.877716	4
CGTAGGG	580	80.246864	2
AGTAGGG	3320	74.62656	2
AGGGCAT	1600	73.72769	5
CGAAGGG	1865	73.355896	2
TAGGGCG	445	71.81676	4
AGGGCAC	1350	71.71506	5
GAATAGG	1295	71.19705	1
TACGGGT	200	70.4966	3
AGGGATG	2730	70.41052	5
GTAGGGC	970	70.25433	3
ATAGCGG	335	70.21031	1
ATAGGGC	1250	69.55664	3
GGTAAGG	1290	69.28506	1
GGGCGAT	815	69.19911	6
AAGGGCA	2665	68.95352	4
AGTAAGG	1310	68.94545	1
TAAGGGA	1705	68.91163	3
GGGGGGA	35210	68.90153	6