SRR3126892.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126892.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1815054
Sequences flagged as poor quality	0
Sequence length	100
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	48687	2.6823995319147533	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTT	5387	0.29679557743185603	No Hit
CGCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCT	4502	0.24803669753076218	RNA PCR Primer, Index 38 (95% over 21bp)
CGTTTCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCT	4022	0.22159120334711802	No Hit
CCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTG	3885	0.21404321854886962	RNA PCR Primer, Index 38 (95% over 22bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2868	0.15801182774727363	No Hit
CTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC	2570	0.14159358344159456	RNA PCR Primer, Index 38 (95% over 23bp)
CGTCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTC	2239	0.12335721141078998	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTC	2078	0.11448695190335934	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	16805	90.32968	1
ATAGCGG	335	77.470406	1
AGGGTAC	1235	75.72125	5
TAGGGTC	780	74.94192	4
ATAGGGC	1170	73.73317	3
ACGGGAT	475	73.44052	4
AGAGGGT	2615	73.00978	3
AAGGGTA	1965	72.93041	4
GAGGGTA	1365	72.17908	4
TAGGGTA	880	71.7827	4
CGTAGGG	555	71.35033	2
AGGGTAT	1515	71.03208	5
AAGGGTC	2080	70.71132	4
GTAGGGT	870	70.4404	3
ACGGGTA	395	70.41296	4
TAAGGGA	1825	70.00098	3
ATAGGGT	1160	69.492165	3
ACGGGTC	335	68.95233	4
AGGGTGC	1180	68.89628	5
ATAAGGG	2430	68.28826	2