SRR3126891.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126891.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1812863
Sequences flagged as poor quality	0
Sequence length	100
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	46378	2.558273846396556	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTT	5323	0.2936239528304125	No Hit
CGCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCT	4416	0.24359259359366925	RNA PCR Primer, Index 38 (95% over 21bp)
CGTTTCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCT	3999	0.22059030384535402	No Hit
CCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTG	3881	0.21408126262161012	RNA PCR Primer, Index 38 (95% over 22bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2798	0.154341502915554	No Hit
CTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC	2654	0.14639826616793436	RNA PCR Primer, Index 38 (95% over 23bp)
CGTTTTCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTC	2112	0.11650080563175487	No Hit
CGTCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTC	2103	0.11600435333502862	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	16055	89.286255	1
ACGGGAT	410	79.09194	4
ACGGGTA	275	76.903625	4
AGGGTAC	1205	76.4427	5
AAGGGTA	1785	73.98354	4
AGAGGGT	2610	73.82617	3
TAGGGTC	780	73.5076	4
ACGGGTC	320	73.43229	4
ATAGCGG	395	72.653275	1
AGGGATG	2580	72.49873	5
AAGGGTC	1900	72.4738	4
AGGGTAT	1495	71.67384	5
GAGGGTA	1440	71.14773	4
TAGGGTA	1050	70.71879	4
TAACGGG	560	70.52417	2
TACGGGT	240	70.494995	3
ATAGGGT	1420	70.16403	3
CGAAGGG	1700	69.69447	2
AGAGGGC	2530	69.65909	3
TAGCGGG	1000	68.64353	2